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Registros recuperados: 117
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Short-tandem repeat analysis in seven Chinese regional populations Genet. Mol. Biol.
Song,Xing-bo; Zhou,Yi; Ying,Bin-wu; Wang,Lan-lan; Li,Yi-song; Liu,Jian-feng; Bai,Xiao-gang; Zhang,Lei; Lu,Xiao-jun; Wang,Jun; Ye,Yuan-xin.
In the present study, we investigated the application of 13 short tandem repeat (STR) loci (D13S317, D7S820, TH01, D16S539, CSFIPO, VWA, D8S1179, TPOX, FGA, D3S1358, D21S11, D18S51 and D5S818) routinely used in forensic analysis, for delineating population relationships among seven human populations representing the two major geographic groups, namely the southern and northern Chinese. The resulting single topology revealed pronounced geographic and population partitioning, consistent with the differences in geographic location, languages and eating habits. These findings suggest that forensic STR loci might be particularly powerful tools in providing the necessary fine resolution for reconstructing recent human evolutionary history.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Forensic medicine; Population genetics; Short-tandem repeat; Human evolutionary history; Genetic distance.
Ano: 2010 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572010000400002
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Small-scale connectivity of coralligenous habitats: insights from a modelling approach within a semi-opened Mediterranean bay ArchiMer
Rossi, Vincent; Lo, Madiop; Legrand, Terence; Ser-giacomi, Enrico; De Jode, Aurélien; Thierry De Ville D’avray, Laure; Pairaud, Ivane; Faure, Vincent; Fraysse, Marion; Pinazo, Christel; Chenuil, Anne.
Habitat connectivity is central to several key evolutionary and ecological processes, having implications for the spatial structuring of marine populations. For benthic species that have no or little mobility as adults, connectivity is evaluated by analyzing the dispersal of propagules across the seascape. We investigate fine-scale connectivity of coralligenous habitats in Marseille Bay (located in the north-western Mediterranean) sea using high-resolution cartography and a particle-tracking model ran over a range of parameters derived from the biological traits of potential target species. We present annual and seasonal means of various connectivity diagnostics measuring the retention and exchange of propagules among coralligenous patches. A synthetic...
Tipo: Text Palavras-chave: Habitat connectivity; Larval dispersal; Coralligenous assemblages; Benthic organisms; Oceanic circulation; Lagrangian modeling; Population genetics; Community composition.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00680/79225/81737.pdf
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Speciation in the Deep Sea: Multi-Locus Analysis of Divergence and Gene Flow between Two Hybridizing Species of Hydrothermal Vent Mussels ArchiMer
Faure, Baptiste; Jollivet, Didier; Tanguy, Arnaud; Bonhomme, Francois; Bierne, Nicolas.
Background: Reconstructing the history of divergence and gene flow between closely-related organisms has long been a difficult task of evolutionary genetics. Recently, new approaches based on the coalescence theory have been developed to test the existence of gene flow during the process of divergence. The deep sea is a motivating place to apply these new approaches. Differentiation by adaptation can be driven by the heterogeneity of the hydrothermal environment while populations should not have been strongly perturbed by climatic oscillations, the main cause of geographic isolation at the surface. Methodology/Principal Finding: Samples of DNA sequences were obtained for seven nuclear loci and a mitochondrial locus in order to conduct a multi-locus...
Tipo: Text Palavras-chave: Mid atlantic ridge; Snake pit area; Population genetics; Drosophila pseudooscura; Bathymodiolus bivalvia; Statistical properties; Subdivided population; Phylogenetic networks; Dna polymorphism; Neutrality tests.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00129/24012/21972.pdf
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Storage protein variability in natural populations of maté (Ilex paraguariensis) in Brazil Ciência Rural
Gregianini,Tatiana Schäffer; Winge,Helga.
ABSTRACT: Samples of 168 maté trees (Ilex paraguariensis) from four natural populations of different states of Brazil (Rio Grande do Sul, Santa Catarina, Paraná and Mato Grosso do Sul) were analyzed for their variability in storage proteins seed, which were used to estimate the degree of differentiation among and within species, because are relatively stable during evolution. Data on band presence/absence from 80 different polypeptides were used to perform similarity coefficient of Jaccard. A high level of genetic variability was reported within sampled populations (SJ intra=0.374). Lower levels of diversity were observed between populations (SJ inter=0.308). Total genetic diversity of maté was Hsp=0.264 estimated by Shannon measure. Partition of that...
Tipo: Info:eu-repo/semantics/article Palavras-chave: ‘chimarrão’; Germoplasm banks; Population genetics.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782019000200750
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Structure of genetic diversity of Bemisia tabaci (Genn.) (Hemiptera: Aleyrodidae) populations in Brazilian crops and locations Scientia Agricola
Fontes,Fernanda von Hertwig Mascarenhas; Colombo,Carlos Augusto; Lourenção,André Luiz.
Bemisia tabaci (Genn.) represents a complex of cryptic species that causes losses of many valuable crops. Even though there are differences in their ability to colonize hosts, transmit phytovirus and develop resistance to insecticides, the genetic differentiation of the insect populations is important for the adoption of control measures. Therefore, the genetic diversity of B. tabaci populations in economically important crops in Brazilian locations was characterized through a microsatellite analysis. Eight microsatellite markers were used for the analysis of eight populations, three in Solanum tuberosum (States of São Paulo, Minas Gerais and Bahia), two in Glycine max (States of São Paulo and Mato Grosso), one in Phaseolus vulgaris and Brassica oleracea...
Tipo: Info:eu-repo/semantics/article Palavras-chave: SSR; Biotype B; Population genetics; Silverleaf whitefly.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162012000100007
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Studies on diversity and evolution of Iridaceae species in southern Brazil Genet. Mol. Biol.
Souza-Chies,Tatiana T.; Santos,Eliane Kaltchuk dos; Eggers,Lilian; Flores,Alice Mainieri; Alves,Eudes M. Stiehl; Fachinetto,Juliana; Lustosa,Juliana; Corrêa,Lauís Brisolara; Tacuatiá,Luana Olinda; Piccoli,Paula; Miz,Rogéria Beatriz.
Plants of the family Iridaceae are well represented in the grassland vegetation of southern Brazil, occurring in the Pampa and Atlantic Forest biomes. Nevertheless, little is known about the taxonomy and evolution of Iridaceae species in southern Brazil. The main goal of this review is to compile published information about South American Iridaceae, and to discuss the evolution and genetic diversity of the family presenting our own research data in the light of the published literature. The main focus is on the genera Calydorea, Cypella, Herbertia, and Sisyrinchium. Aspects of reproductive system and of pollinator attraction are also discussed.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Cytotaxonomy; Molecular phylogenetics; Iridoideae; Population genetics; Diversity.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000600018
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Superoxide dismutase, catalase, glutathione peroxidase and gluthatione S-transferases M1 and T1 gene polymorphisms in three Brazilian population groups Genet. Mol. Biol.
Hiragi,Cássia de Oliveira; Miranda-Vilela,Ana Luisa; Rocha,Dulce Maria Sucena; ,Silviene Fabiana de; Hatagima,Ana; Klautau-Guimarães,Maria de Nazaré.
Antioxidants such as superoxide dismutase (SOD), catalase (CAT) and glutathione peroxidase (GPX1) reduce the oxidation rates in the organism. Gluthatione S-transferases (GSTs) play a vital role in phase 2 of biotransformation of many substances. Variation in the expression of these enzymes suggests individual differences for the degree of antioxidant protection and geographical differences in the distribution of these variants. We described the distribution frequency of CAT (21A/T), SOD2 (Ala9Val), GPX1 (Pro198Leu), GSTM1 and GSTT1 polymorphisms in three Brazilian population groups: Kayabi Amerindians (n = 60), Kalunga Afro-descendants (n = 72), and an urban mixed population from Federal District (n = 162). Frequencies of the variants observed in Kalunga...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Antioxidants; PCR-RFLP; Gene polymorphisms; Brazilian ethnicities; Population genetics; Pharmacogenetics.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572011000100003
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The European sea bass: a key marine fish model in the wild and in aquaculture ArchiMer
Vandeputte, Marc; Gagnaire, P.‐a.; Allal, Francois.
The European sea bass (Dicentrarchus labrax L.) is a marine fish of key economic and cultural importance in Europe. It is now more an aquaculture than a fisheries species (>96% of the production in 2016), although modern rearing techniques date back only from the late 1980s. It also has high interest for evolutionary studies, as it is composed of two semispecies (Atlantic and Mediterranean lineages) that have come into secondary contact following the last glaciation. Based on quantitative genetics studies of most traits of interest over the past 10–15 years, selective breeding programs are now applied to this species, which is at the beginning of its domestication process. The availability of a good quality reference genome has accelerated the...
Tipo: Text Palavras-chave: Dicentrarchus labrax; Genetics; Heritability; Population genetics.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00486/59752/62858.pdf
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The golden age of Drosophila research at the Universidade de São Paulo (USP): a testimonial on the decades 1940-1950 Genet. Mol. Biol.
Magalhães,Luiz Edmundo de; Vilela,Carlos Ribeiro.
This article is a testimonial written by the first author regarding the research work performed with Drosophila between 1943 and 1959, at the Departamento de Biologia Geral of the Universidade de São Paulo (USP), which permitted the building of a nucleus of excellence. This research work, focused on the systematics and population genetics of the Neotropical species, began during the first of Dobzhansky's six visits to USP. Special attention was given to the multinational megaprojects conducted during his longer stays, from August 1948 to July 1949 and from June 1955 to July 1956. The role played by the Rockefeller Foundation is duly remembered, and so is the undeniable contribution brought by Dobzhansky, to the establishment of several laboratories...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Departamento de Biologia Geral; FFCL; Rockefeller Foundation; Population genetics; Theodosius Dobzhansky.
Ano: 2014 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572014000100020
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The impact of aquaculture on the genetics and distribution of the onuphid annelid Diopatra biscayensis ArchiMer
Galaska, Matthew P.; Wethey, David S.; Arias, Andrés; Dubois, Stanislas; Halanych, Kenneth M.; Woodin, Sarah A..
Aim Evolutionary history of natural populations can be confounded by human intervention such as the case of decorator worm species Diopatra (Onuphidae), which have a history of being transported through anthropogenic activities. Because they build tubes and act as ecosystem engineers, they can have a large impact on the overall ecosystem in which they occur. One conspicuous member, Diopatra biscayensis, which was only described in 2012, has a fragmented distribution that includes the Bay of Biscay and the Normanno‐Breton Gulf in the English Channel. This study explores the origin of these worms in the Normanno‐Breton region, which has been debated to either be the result of a historic range contraction from a relic continuous population or a more recent...
Tipo: Text Palavras-chave: Bay of Biscay; Convex Hull; Onuphidae; Phylogeography; Population genetics; RADseq.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00692/80411/83522.pdf
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The most important fishery resource in the Amazon, the migratory catfish Brachyplatystoma vaillantii (Siluriformes: Pimelodidae), is composed by an unique and genetically diverse population in the Solimões-Amazonas River System Neotropical Ichthyology
Formiga,Kyara Martins; Batista,Jacqueline da Silva; Alves-Gomes,José Antônio.
ABSTRACT The migratory catfish Brachyplatystoma vaillantii is one of the most important fishery resources in the Amazon. Intense capture occurs associated to its life cycle. In order to know the genetic status, we sequenced the mitochondrial DNA control region from 150 individuals of B. vaillantii, collected in five fishing landing locations, covering the length of the Solimões-Amazonas River in Brazil. Genetic diversity parameters suggest there is no genetic differentiation between the five localities. Population’s expansion indicated by R 2 and Fu’s Fs tests was also confirmed by the high number of unique haplotypes found. The Analyses of molecular variance indicated that nearly all variability was contained within locations (99.86%), and estimates of...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Control region; Fishery resources; MtDNA; Piramutaba; Population genetics.
Ano: 2021 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252021000100213
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The most vagile host as the main determinant of population connectivity in marine macroparasites ArchiMer
Feis, Marieke E.; Thieltges, David W.; Olsen, Jeanine L.; De Montaudouin, Xavier; Jensen, K. Thomas; Bazairi, Hocein; Culloty, Sarah C.; Luttikhuizen, Pieternella C..
Although molecular ecology of macroparasites is still in its infancy, general patterns are beginning to emerge, e.g. that the most vagile host in a complex life cycle is the main determinant of the population genetic structure of their parasites. This insight stems from the observation that populations of parasites with only freshwater hosts are more structured than those with terrestrial or airborne hosts. Until now, the same has not been tested for marine systems, where, in theory, a fully marine life cycle might sustain high dispersal rates because of the absence of obvious physical barriers in the sea. Here, we tested whether a marine trematode parasite that utilises migratory birds exhibited weaker population genetic structure than those whose life...
Tipo: Text Palavras-chave: Marine ecology; Population genetics; Parasite; Host parasite dynamics; Trematode; Invertebrates; Gymnophallus choledochus; Bucephalus minimus.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00375/48625/49417.pdf
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The role of natural selection in human evolution – insights from Latin America Genet. Mol. Biol.
Salzano,Francisco M..
Abstract A brief introduction considering Darwin's work, the evolutionary synthesis, and the scientific biological field around the 1970s and subsequently, with the molecular revolution, was followed by selected examples of recent investigations dealing with the selection-drift controversy. The studies surveyed included the comparison between essential genes in humans and mice, selection in Africa and Europe, and the possible reasons why females in humans remain healthy and productive after menopause, in contrast with what happens in the great apes. At the end, selected examples of investigations performed in Latin America, related to the action of selection for muscle performance, acetylation of xenobiotics, high altitude and tropical forest adaptations...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Natural selection; Human evolution; Population genetics; Human adaptation; History of genetics.
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572016000300302
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Utility of 18S rDNA and ITS sequences as population markers for Lepeophtheirus salmonis (Copepoda: Caligidae) parasitising Atlantic salmon (Salmo salar) in Scotland Naturalis
Shinn, A.P.; Banks, B.A.; Tange, N.; Bron, J.E.; Sommerville, C.; Aoki, T.; Wootten, R..
Genetic differentiation within the salmon louse Lepeophtheirus salmonis (Krøyer, 1837), was investigated by the sequencing of specific nucleotide regions. Partial sequences of the 18S ribosomal RNA gene and the ribosomal internal transcribed spacer (ITS-1) region from single sea lice were amplified by the polymerase chain reaction (PCR). Lice were collected from wild and farmed Atlantic salmon ( Salmo salar L., 1758) from nine selected localities around the Scottish coastline. A 0.9kb fragment of the 18S ribosomal RNA gene was amplified and compared for several samples of lice which showed no observable differences between the lice from different collection sites confirming the absence of cryptic species. The 454 nucleotide ITS-1 sequence showed...
Tipo: Article / Letter to the editor Palavras-chave: Sea louse; Copepod; Crustacea; Atlantic salmon; Sequencing; 18S ribosomal DNA; Internal transcribed spacer; Population genetics.
Ano: 2000 URL: http://www.repository.naturalis.nl/record/534343
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Variabilite genetique de quelques especes de crevettes Peneides d'interet aquacole ArchiMer
Ko, G; Pasteur, N; Bonhomme, Francois; Liao, D.
Thirteen populations belonging to seven species of Penaeid prawns (Crustacea, Decapoda) were analyzed at 29 protein loci. The authors show that both inter and intrapopulational genetic diversity are very low. These results are discussed in view of their use as guidance for aquaculture programs.
Tipo: Text Palavras-chave: Penaeus kerathurus; Penaeus orientalis; Penaeus indicus; Penaeus monodon; Penaeus stylirostris; Penaeus japonicus; Penaeidae; Malacostraca; Prawn culture; Aquaculture development; Sexual reproduction; Biopolymorphism; Population genetics; Polymorphisme enzymatique; Variabilité génétique; Crevettes Pénaeides; Crustacés.
Ano: 1983 URL: http://archimer.ifremer.fr/doc/1983/acte-1186.pdf
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Variance of reproductive success in the European flat oyster Ostrea edulis assessed by microsatellite-based parentage analyses in a natural population and in hatchery ArchiMer
Lallias, Delphine; Taris, Nicolas; Boudry, Pierre; Bonhomme, Francois; Lapegue, Sylvie.
he European flat oyster (Ostrea edulis L.) is a marine bivalve whose natural geographical distribution ranges along the European Atlantic coast from Norway to Morocco, in addition to the Mediterranean and Black Sea. Previous studies of allozymes, microsat-ellites and mitochondrial differentiation over the whole range concluded that a significant divergence existed between Mediterranean and Atlantic populations, together with an isolation-by-distance pattern. However, the average mitochondrial haplotypic diversity displayed a high among populations variance, reflecting smaller effective population size in some locations. Additionally, a ten-fold quantitative difference was observed in the same study in Fst between the mitochondrial and the nuclear genomes,...
Tipo: Text Palavras-chave: Genotypes; Genetic diversity; Breeding success; Allozymes; Population genetics; Parentage analyses; Natural population; Ostrea edulis; Oyster.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/acte-3334.pdf
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When physical oceanography meets population genetics: The case study of the genetic/evolutionary discontinuity in the endangered goliath grouper (Epinephelus itajara, Perciformes: Epinephelidae) with comments on the conservation of the species ArchiMer
Benevides, E. A.; Vallinoto, M. N. S.; Fetter Filho, A. F. H.; De Souza, J. R. B.; Silva-oliveira, G.; Freitas, M. O.; Ferreira, B. P.; Hostim-silva, M.; Bertoncini, A. A.; Blanchard, Fabian; Torres, R. A..
Epinephelus itajara is one of the marine fish species most threatened for extinction and it is considered to be "critically endangered" by the IUCN. The present study evaluated the genetic diversity of the species and the genetic/evolutionary relationships of its populations along the Atlantic coast of South America. The results indicate relatively reduced genetic variation, re-emphasizing the low adaptive potential of the species. One of the populations presented relatively high degrees of genetic diversity and it is evolutionary isolated from the all other populations. The evidences indicate the existence of two Evolutionarily Significant Units comprising E. itajara in the Atlantic coast of South America and the conservation prospects for the species...
Tipo: Text Palavras-chave: Epinephelus itajara; ISSRs; Population genetics; Conservation genetics.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00230/34100/34465.pdf
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